Publications

2024

Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbellii

Orel, N., Fadeev, E., Herndl, G. J.,  Turk, V., &  Tinta, T. (2024).
BMC Genomics 25, 146. https://doi.org/10.1186/s12864-024-10062-2 

Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter

Fadeev, E., Hennenfeind, J., Amano, C., Zhao, Z., Klun, K., Herndl, G. J., & Tinta T. (2024).
mSystems, e01264-23. https://doi.org/10.1128/msystems.01264-23

2023

Selecting 16S rRNA Primers for Microbiome Analysis in a Host–Microbe System: The Case of the Jellyfish Rhopilema nomadica

 Barak, N., Fadeev, E., Brekhman, V., Aharonovich, D., Lotan, T., & Sher D. (2023).
Microorganisms 2023, 11(4), 955. https://doi.org/10.3390/microorganisms11040955

2022

Characterization of membrane vesicles in Alteromonas macleodii indicates potential roles in their copiotrophic lifestyle

Fadeev, E., Bastos, C. C., Hennenfeind, J., Biller, S. J., Sher, D. J., Wietz, M., & Herndl, G. J. (2022).
MicroLife, December, 2022. https://doi.org/10.1093/femsml/uqac025

Bacterial Indicators Are Ubiquitous Members of Pelagic Microbiome in Anthropogenically Impacted Coastal Ecosystem

Orel, N., Fadeev, E., Klun, K., Ličer , M., Tinta, T., & Turk, V. (2020).

Frontiers in Microbiology, 12.  https://doi.org/10.3389/fmicb.2021.765091 

2021

Sea ice presence is linked to higher carbon export and vertical microbial connectivity in the Eurasian Arctic Ocean

Fadeev, E., Rogge, A., Ramondenc, S., Nöthig, E.-M., Wekerle, C., Bienhold, C., Salter, I., Waite, A. M., Hehemann, L., Boetius, A., & Iversen, M. H. (2021).
Communications Biology, 4(1), 1–13. https://doi.org/10.1038/s42003-021-02776-w

Seasonal Dynamics Are the Major Driver of Microbial Diversity and Composition in Intensive Freshwater Aquaculture

Marmen, S. ‡ , Fadeev, E. ‡ , Al Ashhab, A., Benet-Perelberg, A., Naor, A., Patil, H. J., Cytryn, E., Viner-Mozzini, Y., Sukenik, A., Lalzar, M., & Sher, D. (2021).  ( ‡ - equal contribution)
Frontiers in Microbiology, 12, 679743.  https://doi.org/10.3389/fmicb.2021.679743

Submesoscale physicochemical dynamics directly shape bacterioplankton community structure in space and time

Fadeev, E., Wietz, M., von Appen, W.-J., Iversen, M. H., Nöthig, E.-M., Engel, A., Grosse, J., Graeve, M., & Boetius, A. (2021).

Limnology and Oceanography, 66(7), 2901–2913. https://doi.org/10.1002/lno.11799 

Spatial Distribution of Arctic Bacterioplankton Abundance Is Linked to Distinct Water Masses and Summertime Phytoplankton Bloom Dynamics (Fram Strait, 79°N)

Cardozo-Mino, M. G. ‡ , Fadeev, E., Salman-Carvalho, V., & Boetius, A. (2021). ( ‡ - equal contribution)
Frontiers in Microbiology, 12, 658803. https://doi.org/10.3389/fmicb.2021.658803 

Comparison of Two 16S rRNA Primers (V3-V4 and V4-V5) for Studies of Arctic Microbial Communities

Fadeev, E., Cardozo-Mino, M. G., Rapp, J. Z., Bienhold, C., Salter, I., Salman-Carvalho, V., Molari, M., Tegetmeyer, H. E., Buttigieg, P. L., & Boetius, A. (2021).

Frontiers in Microbiology, 12, 637526. https://doi.org/10.3389/fmicb.2021.637526

Functional Seasonality of Free-Living and Particle-Associated Prokaryotic Communities in the Coastal Adriatic Sea

Steiner, P. A., Geijo, J., Fadeev, E., Obiol, A., Sintes, E., Rattei, T., & Herndl, G. J. (2020).

Frontiers in Microbiology, 11, 584222. https://doi.org/10.3389/fmicb.2020.584222

2020

Functional Seasonality of Free-Living and Particle-Associated Prokaryotic Communities in the Coastal Adriatic Sea

Steiner, P. A., Geijo, J., Fadeev, E., Obiol, A., Sintes, E., Rattei, T., & Herndl, G. J. (2020).

Frontiers in Microbiology, 11, 584222. https://doi.org/10.3389/fmicb.2020.584222

2018

Microbial Communities in the East and West Fram Strait During Sea Ice Melting Season

Fadeev, E., Salter, I., Schourup-Kristensen, V., Nöthig, E.-M., Metfies, K., Engel, A., Piontek, J., Boetius, A., & Bienhold, C. (2018).
Frontiers in Marine Science, 5, 429. https://doi.org/10.3389/fmars.2018.00429 

Marine microbes in 4D-using time series observation to assess the dynamics of the ocean microbiome and its links to ocean health

Buttigieg, P. L., Fadeev, E., Bienhold, C., Hehemann, L., Offre, P., & Boetius, A. (2018).
Current Opinion in Microbiology, 43, 169–185. https://doi.org/10.1016/j.mib.2018.01.015 

2016

How Clonal Is Clonal? Genome Plasticity across Multicellular Segments of a “Candidatus Marithrix sp.” Filament from Sulfidic, Briny Seafloor Sediments in the Gulf of Mexico 

Salman-Carvalho, V., Fadeev, E., Joye, S. B., & Teske, A. (2016).
Frontiers in Microbiology, 7, 1173. https://doi.org/10.3389/fmicb.2016.01173 

Why Close a Bacterial Genome? The Plasmid of Alteromonas Macleodii HOT1A3 is a Vector for Inter-Specific Transfer of a Flexible Genomic Island 

Fadeev, E., De Pascale, F., Vezzi, A., Hübner, S., Aharonovich, D., & Sher, D. (2016).
Frontiers in Microbiology, 7, 248. https://doi.org/10.3389/fmicb.2016.00248